liftover

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

Pure-python implementation of UCSC liftOver genome coordinate conversion

liftover for python, made fast with cython

Same species annotation lift over pipeline.

A fast and efficient tool for converting chromatin interaction data between genome assemblies

A Nextflow workflow to generate lift over files for any pair of genomes

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.

Lifterover copy number segments in whole

A crate for working with genomics chain files.

An efficient genetic data imputation pipeline

Variant translation library for Clojure

Fast VCF toolkit — normalize, liftover, filter — as a single static binary. 4× faster than bcftools on hot paths. No htslib, no Python, no C dependencies.

a python pipeline to generate chain files between different genome assemblies for LiftOver.

Go Language implementation of LiftOver

Perform liftover on plink files

Code for annotating GWAS with rsIDs and performing genome build liftover

Repository for miscellaneous bioinformatics scripts that may be useful to others.

the Unfancy Liftover Toolkit in AWK

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger