gwas

Cloud-native genomic dataframes and batch computing

A comprehensive tutorial about GWAS and PRS

GWAS Tutorial for Beginners

An open-source toolkit for large-scale genomic analysis

Scalable genetics toolkit

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

Pan-genome wide association studies

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

Single-cell disease relevance score (scDRS)

Codebook from my GWAS cookbook

An R package for creating Q-Q and manhattan plots from GWAS results

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

machine learning for genomic variants

Rare variant test software for next generation sequencing data

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

SEER, reimplemented in python 🐍🔮

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.