homologene

🐭 ↔️ 👫 An r package that works as a wrapper to homologene

Download biological databas, extract database identifier and entrez gene identifier, insert in a mongo database

Knowledge base for Orange3-bioinformatics add-on

💻 A unified bioinformatics tool for exploring evolutionarily conserved 🧬 proteins across model organisms. Combines multi-database ortholog search with Gene Ontology annotation extension. 🎓 PhD project, King's College London (2013-2019).

💻 Archive of my bioinformatics tool for exploring evolutionarily conserved 🧬 proteins across five model organisms using orthology databases (eggNOG, inParanoid, Homologene etc.). 🎓 Part of my PhD project, King's College London (2013-2019).

A small pipeline to extract homologs from Homologene

CAN (core and noncore) Disorder Protein retriever uses Homologene to find homologous proteins for human, fly, worm, yeast, and frog, and then queries those proteins in D2P2 database for disorder.

Orthologs Databases — Archive of bioinformatics databases and PHP processing pipelines for cross-species ortholog analysis across 7 model organisms (2012-2016). Integrates data from 21 sources including HomoloGene, InParanoid, OrthoMCL, eggNOG, BioGRID, STRING, Gene Ontology, KEGG, and Reactome.