genesets

Explore the cancer relevance of your gene list

Molecular Signatures Database (MSigDB) in a tidy data frame

Knowledge-Graph-UI (KG-UI) is an open-source web-based user interface built for KGs stored in Neo4j. The UI features Cypher queries for viewing immediate neighbors as well as shortest paths between two entities. Additionally, the API can be extended to add other functions such as enrichment analysis, and specialized queries. Example implementation:

Collection of classes to store gene sets.

Ready-to-use curated genesets for cinaR

An R package containing multiple data sets for bioinformatics analysis

Knowledge base for Orange3-bioinformatics add-on

GeneSetCart is an interactive web-based platform that enables investigators to gather gene sets from various sources; augment these sets with gene-gene co-expression correlations and protein-protein interactions; perform set operations on these sets such as union, consensus, and intersection; and visualize and analyze these gene sets.

GSEA plugin for PathVisio

As part of the DRPPM-PATH-SURVEIOR family, this R Shiny app aims to identify clusters of pathways based on Jaccard Distance