An R package for de novo discovery of enriched DNA motifs (e.g. TFBS)
Pipeline: Identification of cis-regulatory elements by matrix scoring and analysis of supporting empirical biological data.
Benchmarks collection for GRECO TFBS Benchmarking Initiative
Pipeline: Identification of cis-regulatory elements by matrix scoring and conservation.
Plot position weight matrices (PWM)
A package to identify functional TFBS
As a cell-free DNA (cfDNA) processing pipeline, Triton conducts fragmentomic and phased-nucleosome coverage analyses on individual or composite genomic regions and outputs both region-level biomarkers and nt-resolution signal profiles.
A tool to search for motifs within the whole genome or regions of interest
Prediction of the binding sites of multiple transcription factors in a whole genome
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