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xloci Public
get sequences from 2bit/fa using bed/gtf/gff
Rust Apache License 2.0 UpdatedSep 5, 2026 -
ark Public
A Reference pipeline to annotate euKaryotes at high resolution
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packbed Public
pack a .bed into overlapping components
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netools Public
work with .net files in Rust
Rust GNU General Public License v3.0 UpdatedAug 14, 2026 -
deacon Public
Forked from bede/deaconFast DNA search and [host] depletion using minimizers
Rust MIT License UpdatedAug 12, 2026 -
binseq Public
Forked from ArcInstitute/binseqA high efficiency binary format for sequencing data
Rust UpdatedAug 10, 2026 -
bed2gtf Public
high-performance BED-to-GTF converter written in Rust
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gtfsort Public
a lexicographically-based GTF/GFF sorter
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedAug 7, 2026 -
rustar-aligner Public
Forked from scverse/rustar-alignerA rust implementation of STAR
Rust MIT License UpdatedAug 6, 2026 -
bamsplit Public
Lossless, high-throughput partitioning of BAM files
Rust GNU General Public License v3.0 UpdatedAug 2, 2026 -
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TOGA2 Public
Forked from hillerlab/TOGA2TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments
Python MIT License UpdatedJun 30, 2026 -
genepred Public
a port of the GenePred format in Rust
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genomemask Public
mask specific regions of a genome in any format
Rust Apache License 2.0 UpdatedJun 20, 2026 -
multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
UpdatedJun 19, 2026 -
gxf2bed Public
fastest GTF/GFF-to-BED converter chilling around
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fxsplit Public
split FASTX (and 2bit) into N chunks/files/headers
Rust Apache License 2.0 UpdatedJun 3, 2026 -
make_lastz_chains Public
Forked from hillerlab/make_lastz_chainsPortable solution to generate genome alignment chains using lastz
Python MIT License UpdatedMay 30, 2026 -
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postoga Public
The post-TOGA processing pipeline
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intronIC Public
Forked from glarue/intronICRetrieve annotated intron sequences and classify them as minor (U12-type) or major (U2-type) using a support vector-machine model.
Python GNU General Public License v3.0 UpdatedNov 26, 2025 -
prank-msa Public
Forked from ariloytynoja/prank-msaAutomatically exported from code.google.com/p/prank-msa
C++ UpdatedNov 24, 2025 -
beaver Public
Forked from Shao-Group/beaverC++ BSD 3-Clause "New" or "Revised" License UpdatedNov 21, 2025
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