Bayesian Segmentation of Spatial Transcriptomics Data

factor models for omics data

QuPath - Open-source bioimage analysis for research

Table of software for the analysis of single-cell RNA-seq data.

Mass spectrometry imaging toolbox

Multimodal Data (.h5mu) implementation for Python

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

A parser to read .imzML files with python

SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.

1,324-exercise fitness dataset — animation GIFs, 180×180 thumbnails, muscle-group & equipment data, and step-by-step instructions in 6 languages. The exercise data layer behind the LogPress app.

AnnData interoperability in R

Source code for Gramps Genealogical program

Multipass orchestrates virtual Ubuntu instances

🍻 Default and OSS formulae (built-from-source packages) for the package manager for everywhere

inferring regulatory cellular dynamics

NextDNS CLI client (DoH Proxy)

A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data

Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).

Tool suite for HGVS variant descriptions

NVIDIA cuML: GPU-Accelerated Machine Learning

Package for managing conda environment-based kernels inside of Jupyter

Header-only C++/python library for fast approximate nearest neighbors

Interactive Widgets for the Jupyter Notebook

A library for efficient similarity search and clustering of dense vectors.

Accelerated, Python-only, single-cell integration benchmarking metrics

A personal timeline for quick notes. Write short memos, find them later by search, tag, or date. Open source and self-hosted.

Get up and running with Kimi, GLM, MiniMax, DeepSeek, gpt-oss, Qwen, Gemma and other models.