Micom couldn't pick up column names when building community model #227

IndexError                                Traceback (most recent call last)
Cell In[89], line 1
----> 1 manifest = build(
      2     taxonomy,
      3     model_db="./agora201_gtdb207_species_1.qza",
      4     out_folder="br103_model",
      5     threads=2
      6 )

File ~/LUSTRE/miniconda3/lib/python3.9/site-packages/micom/workflows/build.py:111, in build(taxonomy, model_db, out_folder, cutoff, threads, solver)
    106 out_path = pd.Series({s: os.path.join(out_folder, s + ".pickle") for s in samples})
    107 args = [
    108     [s, taxonomy[taxonomy.sample_id == s], model_db, out_path[s], cutoff, solver]
    109     for s in samples
    110 ]
--> 111 res = workflow(build_and_save, args, threads)
    112 metrics = pd.concat(res)
    113 taxonomy = (
    114     taxonomy.groupby("sample_id")
    115     .apply(_reduce_group)
    116     .dropna(axis=1)
    117     .reset_index(drop=True)
    118 )

File ~/LUSTRE/miniconda3/lib/python3.9/site-packages/micom/workflows/core.py:55, in workflow(func, args, threads, description, progress)
     53         if progress:
     54             it = track(it, total=len(args), description="Running")
---> 55         results = list(it)
     56 finally:
     57     pool.close()

File ~/LUSTRE/miniconda3/lib/python3.9/site-packages/rich/progress.py:173, in track(sequence, description, total, completed, auto_refresh, console, transient, get_time, refresh_per_second, style, complete_style, finished_style, pulse_style, update_period, disable, show_speed)
    162 progress = Progress(
    163     *columns,
    164     auto_refresh=auto_refresh,
   (...)
    169     disable=disable,
    170 )
    172 with progress:
--> 173     yield from progress.track(
    174         sequence,
    175         total=total,
    176         completed=completed,
    177         description=description,
    178         update_period=update_period,
    179     )

File ~/LUSTRE/miniconda3/lib/python3.9/site-packages/rich/progress.py:1225, in Progress.track(self, sequence, total, completed, task_id, description, update_period)
   1223 if self.live.auto_refresh:
   1224     with _TrackThread(self, task_id, update_period) as track_thread:
-> 1225         for value in sequence:
   1226             yield value
   1227             track_thread.completed += 1

File ~/LUSTRE/miniconda3/lib/python3.9/multiprocessing/pool.py:870, in IMapIterator.next(self, timeout)
    868 if success:
    869     return value
--> 870 raise value

IndexError: index 0 is out of bounds for axis 0 with size 0



**This is my taxonomy columns when I check for "taxonomy.columns":**

Index(['sample_id', 'id', 'abundance', 'species', 'genus', 'family', 'order',
       'class', 'phylum'],
      dtype='object')